methylInheritance

DOI: 10.18129/B9.bioc.methylInheritance    

Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Bioconductor version: Release (3.14)

Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

Author: Astrid DeschĂȘnes [cre, aut] , Pascal Belleau [aut] , Arnaud Droit [aut]

Maintainer: Astrid DeschĂȘnes <adeschen at hotmail.com>

Citation (from within R, enter citation("methylInheritance")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylInheritance")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylInheritance")

 

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Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 1.18.0
In Bioconductor since BioC 3.5 (R-3.4) (5 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus
LinkingTo
Suggests BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim
SystemRequirements
Enhances
URL https://github.com/adeschen/methylInheritance
BugReports https://github.com/adeschen/methylInheritance/issues
Depends On Me
Imports Me
Suggests Me methInheritSim
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylInheritance_1.18.0.tar.gz
Windows Binary methylInheritance_1.18.0.zip
macOS 10.13 (High Sierra) methylInheritance_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methylInheritance
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylInheritance
Package Short Url https://bioconductor.org/packages/methylInheritance/
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Old Source Packages for BioC 3.14 Source Archive

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