levi

DOI: 10.18129/B9.bioc.levi    

This is the development version of levi; for the stable release version, see levi.

Landscape Expression Visualization Interface

Bioconductor version: Development (3.14)

The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.

Author: Rafael Pilan [aut], Isabelle Silva [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>

Citation (from within R, enter citation("levi")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("levi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("levi")

 

HTML R Script Using levi
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, Network, Sequencing, Software
Version 1.11.5
In Bioconductor since BioC 3.8 (R-3.5) (3 years)
License GPL (>= 2)
Depends
Imports DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat, methods, rmarkdown
LinkingTo Rcpp
Suggests rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package levi_1.11.5.tar.gz
Windows Binary levi_1.11.5.zip (32- & 64-bit)
macOS 10.13 (High Sierra) levi_1.11.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/levi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/levi
Package Short Url https://bioconductor.org/packages/levi/
Package Downloads Report Download Stats

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