eiR

DOI: 10.18129/B9.bioc.eiR    

Accelerated similarity searching of small molecules

Bioconductor version: Release (3.14)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eiR")

 

HTML R Script eiR: Accelerated Similarity Searching of Small Molecules
PDF   Reference Manual
Text   NEWS
Text   INSTALL
Text   LICENSE

Details

biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version 1.34.0
In Bioconductor since BioC 2.12 (R-3.0) (9 years)
License Artistic-2.0
Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9)
LinkingTo
Suggests BiocStyle, knitcitations, knitr, knitrBootstrap, rmarkdown
SystemRequirements
Enhances
URL https://github.com/girke-lab/eiR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eiR_1.34.0.tar.gz
Windows Binary eiR_1.34.0.zip (64-bit only)
macOS 10.13 (High Sierra) eiR_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eiR
Package Short Url https://bioconductor.org/packages/eiR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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