DOI: 10.18129/B9.bioc.destiny    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of destiny; for the stable release version, see destiny.

Creates diffusion maps

Bioconductor version: Development (3.14)

Create and plot diffusion maps.

Author: Philipp Angerer <philipp.angerer at>, Laleh Haghverdi <laleh.haghverdi at>, Maren Büttner <maren.buettner at>, Fabian Theis <fabian.theis at>, Carsten Marr <carsten.marr at>, Florian Büttner <f.buettner at>

Maintainer: Philipp Angerer <philipp.angerer at>

Citation (from within R, enter citation("destiny")):


To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews CellBasedAssays, CellBiology, Clustering, Software, Visualization
Version 3.7.1
In Bioconductor since BioC 3.2 (R-3.2) (6 years)
License GPL
Depends R (>= 3.4.0)
Imports methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, RSpectra (>= 0.14-0), irlba, pcaMethods, Biobase, BiocGenerics, SummarizedExperiment, SingleCellExperiment, ggplot2, ggplot.multistats, tidyr, tidyselect, ggthemes, VIM, knn.covertree, proxy, RcppHNSW, smoother, scales, scatterplot3d
LinkingTo Rcpp, RcppEigen, grDevices
Suggests nbconvertR (>= 1.3.2), igraph, testthat, FNN, tidyr
SystemRequirements C++11, jupyter nbconvert (see nbconvertR’s INSTALL file)
Enhances rgl, SingleCellExperiment
Depends On Me
Imports Me CytoTree, phemd
Suggests Me CelliD, CellTrails, monocle, scater
Links To Me
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