beadarraySNP

DOI: 10.18129/B9.bioc.beadarraySNP    

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: Release (3.14)

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("beadarraySNP")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beadarraySNP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beadarraySNP")

 

PDF R Script beadarraySNP.pdf
PDF   Reference Manual

Details

biocViews CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.60.0
In Bioconductor since BioC 1.9 (R-2.4) (15.5 years)
License GPL-2
Depends methods, Biobase(>= 2.14), quantsmooth
Imports
LinkingTo
Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beadarraySNP_1.60.0.tar.gz
Windows Binary beadarraySNP_1.60.0.zip
macOS 10.13 (High Sierra) beadarraySNP_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/beadarraySNP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beadarraySNP
Package Short Url https://bioconductor.org/packages/beadarraySNP/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: