aroma.light

DOI: 10.18129/B9.bioc.aroma.light    

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Bioconductor version: Release (3.14)

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb], Aaron Lun [ctb]

Maintainer: Henrik Bengtsson <henrikb at braju.com>

Citation (from within R, enter citation("aroma.light")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aroma.light")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization
Version 3.24.0
In Bioconductor since BioC 1.9 (R-2.4) (15.5 years)
License GPL (>= 2)
Depends R (>= 2.15.2)
Imports stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.23.0), R.utils (>= 2.9.0), matrixStats (>= 0.55.0)
LinkingTo
Suggests princurve (>= 2.1.4)
SystemRequirements
Enhances
URL https://github.com/HenrikBengtsson/aroma.light https://www.aroma-project.org
BugReports https://github.com/HenrikBengtsson/aroma.light/issues
Depends On Me
Imports Me EDASeq, scone
Suggests Me TIN
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aroma.light_3.24.0.tar.gz
Windows Binary aroma.light_3.24.0.zip
macOS 10.13 (High Sierra) aroma.light_3.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/aroma.light
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/aroma.light
Package Short Url https://bioconductor.org/packages/aroma.light/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: