MsBackendMgf

DOI: 10.18129/B9.bioc.MsBackendMgf    

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Bioconductor version: Release (3.14)

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] , Johannes Rainer [aut] , Sebastian Gibb [aut]

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsBackendMgf")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMgf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMgf")

 

HTML R Script Description and usage of MsBackendMgf
PDF   Reference Manual

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License Artistic-2.0
Depends R (>= 4.0), Spectra(>= 1.0)
Imports BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats
LinkingTo
Suggests testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
SystemRequirements
Enhances
URL https://github.com/RforMassSpectrometry/MsBackendMgf
BugReports https://github.com/RforMassSpectrometry/MsBackendMgf/issues
Depends On Me
Imports Me
Suggests Me xcms
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MsBackendMgf_1.2.0.tar.gz
Windows Binary MsBackendMgf_1.2.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) MsBackendMgf_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MsBackendMgf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MsBackendMgf
Package Short Url https://bioconductor.org/packages/MsBackendMgf/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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