InteractiveComplexHeatmap

DOI: 10.18129/B9.bioc.InteractiveComplexHeatmap    

This is the development version of InteractiveComplexHeatmap; for the stable release version, see InteractiveComplexHeatmap.

Make Interactive Complex Heatmaps

Bioconductor version: Development (3.14)

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("InteractiveComplexHeatmap")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("InteractiveComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("InteractiveComplexHeatmap")

 

HTML R Script 1. How to visualize heatmaps interactively
HTML R Script 2. How interactive complex heatmap is implemented
HTML R Script 3. Functions for Shiny app development
HTML R Script 4. Decorations on heatmaps
HTML R Script 5. Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap()
HTML R Script 6. A Shiny app for visualizing DESeq2 results
HTML R Script 7. Implement interactive heatmap from scratch
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Sequencing, Software, Visualization
Version 1.1.3
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.0.0)
Imports ComplexHeatmap(>= 2.7.10), grDevices, stats, shiny, grid, GetoptLong, S4Vectors(>= 0.26.1), digest, IRanges, kableExtra (>= 1.3.1), utils, svglite, htmltools, clisymbols, jsonlite, RColorBrewer, fontawesome
LinkingTo
Suggests knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve(>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks
SystemRequirements
Enhances
URL https://github.com/jokergoo/InteractiveComplexHeatmap
BugReports https://github.com/jokergoo/InteractiveComplexHeatmap/issues
Depends On Me
Imports Me
Suggests Me simplifyEnrichment
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package InteractiveComplexHeatmap_1.1.3.tar.gz
Windows Binary InteractiveComplexHeatmap_1.1.3.zip
macOS 10.13 (High Sierra) InteractiveComplexHeatmap_1.1.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/InteractiveComplexHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/InteractiveComplexHeatmap
Package Short Url https://bioconductor.org/packages/InteractiveComplexHeatmap/
Package Downloads Report Download Stats

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