DNAshapeR

DOI: 10.18129/B9.bioc.DNAshapeR    

High-throughput prediction of DNA shape features

Bioconductor version: Release (3.14)

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>

Citation (from within R, enter citation("DNAshapeR")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAshapeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAshapeR")

 

HTML R Script DNAshapeR
PDF   Reference Manual
Text   NEWS

Details

biocViews DNA3DStructure, Software, StructuralPrediction
Version 1.22.0
In Bioconductor since BioC 3.3 (R-3.3) (6 years)
License GPL-2
Depends R (>= 3.4), GenomicRanges
Imports Rcpp (>= 0.12.1), Biostrings, fields
LinkingTo Rcpp
Suggests AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DNAshapeR_1.22.0.tar.gz
Windows Binary DNAshapeR_1.22.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) DNAshapeR_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNAshapeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DNAshapeR
Package Short Url https://bioconductor.org/packages/DNAshapeR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: