ComPrAn

DOI: 10.18129/B9.bioc.ComPrAn    

This is the development version of ComPrAn; for the stable release version, see ComPrAn.

Complexome Profiling Analysis package

Bioconductor version: Development (3.14)

This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.

Author: Rick Scavetta [aut], Petra Palenikova [aut, cre]

Maintainer: Petra Palenikova <pp451 at cam.ac.uk>

Citation (from within R, enter citation("ComPrAn")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ComPrAn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComPrAn")

 

HTML R Script fileFormats.html
HTML R Script Protein workflow
HTML R Script SILAC complexomics
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews MassSpectrometry, Proteomics, Software, Visualization
Version 1.1.2
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License MIT + file LICENSE
Depends
Imports data.table, dplyr, forcats, ggplot2, magrittr, purrr, tidyr, rlang, stringr, shiny, DT, RColorBrewer, VennDiagram, rio, scales, shinydashboard, shinyjs, stats, tibble, grid
LinkingTo
Suggests testthat (>= 2.1.0), knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComPrAn_1.1.2.tar.gz
Windows Binary ComPrAn_1.1.2.zip
macOS 10.13 (High Sierra) ComPrAn_1.1.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComPrAn
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComPrAn
Package Short Url https://bioconductor.org/packages/ComPrAn/
Package Downloads Report Download Stats

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