CGEN

DOI: 10.18129/B9.bioc.CGEN    

An R package for analysis of case-control studies in genetic epidemiology

Bioconductor version: Release (3.14)

This is a package for analysis of case-control data in genetic epidemiology. It provides a set of statistical methods for evaluating gene-environment (or gene-genes) interactions under multiplicative and additive risk models, with or without assuming gene-environment (or gene-gene) independence in the underlying population.

Author: Samsiddhi Bhattacharjee [aut], Nilanjan Chatterjee [aut], Summer Han [aut], Minsun Song [aut], William Wheeler [aut], Matthieu de Rochemonteix [aut], Nilotpal Sanyal [aut], Justin Lee [cre]

Maintainer: Justin Lee <jhylee at stanford.edu>

Citation (from within R, enter citation("CGEN")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGEN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGEN")

 

PDF R Script CGEN Scan Vignette
PDF R Script CGEN Vignette
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, MultipleComparison, SNP, Software
Version 3.30.0
In Bioconductor since BioC 2.7 (R-2.12) (11.5 years)
License GPL-2 + file LICENSE
Depends R (>= 4.0), survival, mvtnorm
Imports stats, graphics, utils, grDevices
LinkingTo
Suggests cluster
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CGEN_3.30.0.tar.gz
Windows Binary CGEN_3.30.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) CGEN_3.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGEN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CGEN
Package Short Url https://bioconductor.org/packages/CGEN/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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