ANF

DOI: 10.18129/B9.bioc.ANF    

Affinity Network Fusion for Complex Patient Clustering

Bioconductor version: Release (3.14)

This package is used for complex patient clustering by integrating multi-omic data through affinity network fusion.

Author: Tianle Ma, Aidong Zhang

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("ANF")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ANF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ANF")

 

HTML R Script Cancer Patient Clustering with ANF
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GraphAndNetwork, Network, Software
Version 1.16.0
In Bioconductor since BioC 3.6 (R-3.4) (4.5 years)
License GPL-3
Depends
Imports igraph, Biobase, survival, MASS, stats, RColorBrewer
LinkingTo
Suggests ExperimentHub, SNFtool, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me HarmonizedTCGAData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ANF_1.16.0.tar.gz
Windows Binary ANF_1.16.0.zip
macOS 10.13 (High Sierra) ANF_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ANF
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ANF
Package Short Url https://bioconductor.org/packages/ANF/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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