.rm_dupes {seqsetvis}R Documentation

Remove duplicate reads based on stranded start position. This is an over-simplification. For better duplicate handling, duplicates must be marked in bam and flag passed to fetchBam() ... for ScanBamParam

Description

flag = scanBamFlag(isDuplicate = FALSE)

Usage

.rm_dupes(reads_dt, max_dupes)

Arguments

reads_dt

data.table of reads as loaded by fetchBam

max_dupes

maximum allowed positional duplicates

Value

reads_dt with duplicated reads over max_dupes removed


[Package seqsetvis version 1.14.4 Index]