plotLOH {rCGH} | R Documentation |
This function display a static view of the allele differences, when available.
## S4 method for signature 'rCGH' plotLOH(object, Title=NULL)
object |
: An object of class |
Title |
: character string. A title for the density plot. If |
None.
Frederic Commo
plotDensity
, plotProfile
, multiplot
,
view
filePath <- system.file("extdata", "Affy_cytoScan.cyhd.CN5.CNCHP.txt.bz2", package = "rCGH") cgh <- readAffyCytoScan(filePath, sampleName = "AffyScHD") cgh <- adjustSignal(cgh, nCores=1) cgh <- segmentCGH(cgh, nCores=1) cgh <- EMnormalize(cgh) # Static visalizations plotLOH(cgh)