assessPerformance_Biosigner {multiSight} | R Documentation |
A biosigner models assessing function. to display by confusion matrices for SVM and RF models.
assessPerformance_Biosigner(modelList, dataTest)
modelList |
Models list computed and returned inside runSVMRFmodels_Biosigner() results. |
dataTest |
List of new omic datasets and samples for same omics that training to test model performances. Returned by splitDatatoTrainTest(). |
List of performances for svm and rf models (confusion matrices).
data("omic2", package = "multiSight") splitData <- splitDatatoTrainTest(omic2, 0.8) data.train <- splitData$data.train data.test <- splitData$data.test #biosignerRes <- runSVMRFmodels_Biosigner(data.train) data("biosignerRes", package = "multiSight") biosignerModels <- biosignerRes$model #list of SVM/RF models for each omic. biosignerFeats <- biosignerRes$biosignature #selected features for each omic. perfBiosigner <- assessPerformance_Biosigner(biosignerModels, data.test) perfBiosigner$svm$rnaRead # perf for SVM for rnaRead data block. perfBiosigner$rf$rnaRead # perf for RF for rnaRead data block.