plotMarkers {mixOmics} | R Documentation |
Plots the standardised values (after centring and/or scaling) for the
selected variables for a given block on a given component. Only applies to
block.splsda
or block.spls
.
plotMarkers( object, block, markers = NULL, comp = 1, group = NULL, col.per.group = NULL, global = FALSE, title = NULL, violin = TRUE, boxplot.width = NULL, violin.width = 0.9 )
object |
An object of class |
block |
Name or index of the block to use |
markers |
Character or integer, only include these markers. If integer, the top 'markers' features are shown |
comp |
Integer, the component to use |
group |
Factor, the grouping variable (only required for
|
col.per.group |
character (or symbol) color to be used when 'group' is defined. Vector of the same length as the number of groups. |
global |
Logical indicating whether to show the global plots (TRUE) or
segregate by feature (FALSE). Only available when |
title |
The plot title |
violin |
(if global = FALSE) Logical indicating whether violin plots should also be shown |
boxplot.width |
Numeric, adjusts the width of the box plots |
violin.width |
Numeric, adjusts the width of the violin plots |
A ggplot object
plotLoadings
, block.splsda
, block.spls
# see ?block.splsda and ?block.spls