smoothQuantileNormalization {lumi} | R Documentation |
Smooth quantile normalization with a reference sample
smoothQuantileNormalization(dataMatrix, ref = NULL, adjData=NULL, logMode = TRUE, bandwidth = NULL, degree = 1, verbose = FALSE, ...)
dataMatrix |
a matrix of microarray intensity data |
ref |
a vector of reference sample intensity, which matches the dataMatrix |
adjData |
data to be adjusted based on the ref and dataMatrix distribution |
logMode |
whether perform the analysis in log2 scale |
bandwidth |
a parameter used by |
degree |
a parameter used by |
verbose |
whether print the processing sample names |
... |
other parameters used by |
a data matrix with intensity normalized.
Pan DU
See Also adjColorBias.quantile