geneSetAnalysis {cpvSNP} | R Documentation |
A list including the following components:
arrayData
– a data.frame of dimension 119487 rows and 4 columns including P-values, SNP ids, position and chromosome for a GWAS experiment;
geneSets
– a GeneSetCollection containing gene Entrez ids;
ldMat
– a matrix of dimension 871 x 871 holding linkage disequilibrium values;
indepSNPs
– a list containing 302 independent SNP ids;
geneSetAnalysis
data(geneSetAnalysis) head(geneSetAnalysis$arrayData)