CellMig-class {cellmigRation}R Documentation

The CellMig Class.

Description

The CellMig class represents objects storing all information for both random migration (RM) and wound scratch assay (WSA). It comprises 14 slots.

Usage

CellMig(..., ExpName = NULL)

## S4 method for signature 'CellMig'
initialize(.Object, trajdata)

CellMig(..., ExpName = NULL)

Arguments

...

arguments to pass to the CellMig constructor

ExpName

string, experiment name (optional)

.Object

the CellMig object being built

trajdata

data frame including trajectory data

Value

An S4-class object

a CellMig object

Slots

trajdata

The raw trajectory data matrix organized into four columns: cell ID, X coordinates, Y coordinates and Track number, which is the track's path order.

adjDS

A data frame of the trajectory data passed from the WSAprep function.

cellpos

A binary vector showing on which side of the wound cells are located. "0" refers to a cell located above the wound whereas "1" refers to a cell located below the wound.

parE

A numeric vector contains estimations for the imageH, woundH, upperE and lowerE.

preprocessedDS

list object of data frames, each data frame shows the trajectories of a single cell.

DRtable

A data frame of the results of running the DiRatio() function.

MSDtable

A data frame of the results of running the MSD() function.

PerAanSpeedtable

A data frame of the results of running the PerAndSpeed() function.

DACtable

A data frame of the results of running the DiAutoCor() function.

VACtable

A data frame of the results of running the VeAutoCor() function.

ForMigtable

A data frame of the results of running the ForwardMigration() function.

FMItable

A data frame of the results of running the FMI() function.

results

A data frame of all the results.

parCor

A data frame for Parameters Correlation.

meta

A list including experiment name, meta data and other information.

Author(s)

Salim Ghannoum salim.ghannoum@medisin.uio.no

Examples

data("TrajectoryDataset")
CellMig(TrajectoryDataset)


[Package cellmigRation version 1.2.0 Index]