mold {biovizBase}R Documentation

mold data into data.frame

Description

mold data into data.frame usued for visualization, so it's sometimes not as simple as coersion, for example, we add midpoint varialbe for mapping.

Usage

## S4 method for signature 'IRanges'
mold(data)
## S4 method for signature 'GRanges'
mold(data)
## S4 method for signature 'GRangesList'
mold(data,indName = "grl_name")
## S4 method for signature 'Seqinfo'
mold(data)
## S4 method for signature 'matrix'
mold(data)
## S4 method for signature 'eSet'
mold(data)
## S4 method for signature 'ExpressionSet'
mold(data)
## S4 method for signature 'RangedSummarizedExperiment'
mold(data, assay.id = 1)
## S4 method for signature 'Views'
mold(data)
## S4 method for signature 'Rle'
mold(data)
## S4 method for signature 'RleList'
mold(data)
## S4 method for signature 'VRanges'
mold(data)

Arguments

data

data to be mold into data.frame with additional column that helped mapping.For example we add 'midpoint' variable to a ranged converted data.frame.

indName

when collapsing a GRangesList, list names are aggregated into extra column named by this parameter.

assay.id

define the assay id you want to convert into a data.frame.

Value

a data.frame object.

Author(s)

Tengfei Yin


[Package biovizBase version 1.42.0 Index]