buildReport {TarSeqQC} | R Documentation |
buildReport
builds an excel file containing some statistical results.
These are computed to the selected attribute (e.g. 'coverage') along features
(e.g. 'amplicon') and genes. If 'imageFile' is null, the graph generated
calling the generic plot function will be used.
ggplotColours
is a function to know what color is used when
ggplot is called.
addStatSummSheet
adds the statistics summary sheet to the workbook
that contains the Target Experiment Report.
buildReport(object, attributeThres = c(0, 1, 50, 200, 500, Inf), imageFile = NULL, file= "Results.xlsx") ## S4 method for signature 'TargetExperiment' buildReport(object, attributeThres = c(0, 1, 50, 200, 500, Inf), imageFile = NULL, file = "Results.xlsx") ggplotColours(object, n) ## S4 method for signature 'TargetExperiment' ggplotColours(object, n) ## S4 method for signature 'TargetExperimentList' ggplotColours(object, n) addStatSummSheet(object, wb, attributeThres = c(0, 1, 50, 200, 500, Inf), imageFile) ## S4 method for signature 'TargetExperiment' addStatSummSheet(object, wb, attributeThres = c(0, 1, 50, 200, 500, Inf), imageFile)
object |
TargetExperiment class object. |
attributeThres |
Numeric indicating the intervals extreme values. |
imageFile |
Character indicating the name of the file that contains the plot that could be insert in the report. |
file |
Character indicating the name of the report. |
n |
amount of colors. |
wb |
A workbook object that will contain the report. |
Workbook object.
colours.
see full example in TargetExperiment-class
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar
## Loading the TargetExperiment object data(ampliPanel,package="TarSeqQC") # definition of the interval extreme values attributeThres<-c(0,1,50,200,500, Inf) ## Building the XLSX report imageFile<-system.file("extdata", "plot.pdf", package="TarSeqQC", mustWork=TRUE) buildReport(ampliPanel, attributeThres=attributeThres, imageFile=imageFile, file="results.xlsx") ## Loading the TargetExperimentList object data(ampliPanel, package="TarSeqQC") colors<-ggplotColours(ampliPanel, n=5) ## Loading the TargetExperimentList object data(TEList, package="TarSeqQC") colors<-ggplotColours(TEList, n=5)