TxFeatures {SGSeq} | R Documentation |
Creates an instance of S4 class TxFeatures
for storing
transcript features.
TxFeatures(x, type = mcols(x)$type, txName = mcols(x)$txName, geneName = mcols(x)$geneName)
x |
|
type |
Character vector or factor, taking value
|
txName |
|
geneName |
|
TxFeatures
extends GRanges
with column slot type
specifying feature type. type
is a factor with levels
J
(splice junction), I
(internal exon),
F
(5' terminal exon), L
(3' terminal exon),
U
(unspliced transcript).
txName
and geneName
are CharacterLists storing
transcript and gene annotation, respectively.
TxFeatures
object
Leonard Goldstein
gr <- GRanges(1, IRanges(101, 200), "+") txf <- TxFeatures(gr, type = "J")