importTranscripts {SGSeq} | R Documentation |
Import GFF file and generate a GRangesList
of transcripts
suitable as input for functions convertToTxFeatures
or
predictVariantEffects
.
importTranscripts(file, tag_tx = "transcript_id", tag_gene = "gene_id")
file |
Character string specifying input GFF file |
tag_tx |
GFF attribute tag for transcript identifier |
tag_gene |
GFF attribute tag for gene identifier |
GRangesList
of exons grouped by transcipts with
metadata columns txName, geneName, cdsStart, cdsEnd.
Leonard Goldstein
## Not run: tx <- importTranscripts(file) ## End(Not run) NULL