matchPaperObjects {ReactomeGraph4R} | R Documentation |
Fetch Reactome instances related to a paper by its PubMed id or title
matchPaperObjects( pubmed.id = NULL, displayName = NULL, type = c("row", "graph") )
pubmed.id |
PubMed identifier of a paper |
displayName |
paper title |
type |
return results as a list of dataframes ('row'), or as a graph object ('graph') |
Reactome instances associated with a paper
Other match:
matchDiseases()
,
matchHierarchy()
,
matchInteractors()
,
matchObject()
,
matchPEroles()
,
matchPrecedingAndFollowingEvents()
,
matchReactionsInPathway()
,
matchReferrals()
## fetch Reactome instances by paper title paper <- "Chaperone-mediated autophagy at a glance" # matchPaperObjects(displayName=paper) ## fetch Reactome instances by pubmed id # matchPaperObjects(pubmed.id="20797626", type="graph") # matchPaperObjects(pubmed.id="23515720", type="row")