matchReferrals {ReactomeGraph4R} | R Documentation |
This method retrieves Reactome objects that are connected with the given object in a reverse relationship. For example, to find Pathways containing the given Reaction.
matchReferrals( id = NULL, displayName = NULL, main = TRUE, depth = 1, all.depth = FALSE, species = NULL, type = c("row", "graph") )
id |
stId or dbId of a Reactome object |
displayName |
displayName of a Reactome object |
main |
if set to |
depth |
number of depths |
all.depth |
if set to |
species |
name or taxon id or dbId or abbreviation of a species |
type |
return results as a list of dataframes ('row'), or as a graph object ('graph') |
For now it just focuses on biological referrals in the following Classes: "Event", "PhysicalEntity", "Regulation", "CatalystActivity","ReferenceEntity" , "Interaction", "AbstractModifiedResidue".
referrals of the given instance
Other match:
matchDiseases()
,
matchHierarchy()
,
matchInteractors()
,
matchObject()
,
matchPEroles()
,
matchPaperObjects()
,
matchPrecedingAndFollowingEvents()
,
matchReactionsInPathway()
stId <- "R-HSA-112479" # matchReferrals("R-HSA-112479", main=FALSE, all.depth=TRUE, type="row")