plot.term_enrichment {RITAN} | R Documentation |
plot.term_enrichment
## S3 method for class 'term_enrichment' plot(x = NA, min_q = 0.05, max_terms = 25, extend_mar = c(0, 10, 0, 0), ...)
x |
data frame returned by term_enrichment |
min_q |
Only q-values more significant than this threshold will be plotted. Default = 0.05. |
max_terms |
Up to max_terms will be plotted. Default = 25. |
extend_mar |
Term names can be long. We attempt to keep them readable by extending the left-hand-side margins automatically. Default = c(0,10,0,0) added to par()$mar. |
... |
Additional arguments are passed on to plot() |
silent return from plot
require(RITANdata) e <- term_enrichment(vac1.day0vs31.de.genes, resources = 'GO_slim_generic') plot(e, min_q = .1)