PlotPTMAcrossSamples {MQmetrics} | R Documentation |
Plot PTM across samples
PlotPTMAcrossSamples( MQCombined, PTM_of_interest = "Oxidation (M)", log_base = 2, long_names = FALSE, sep_names = NULL )
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
PTM_of_interest |
Post-Translation Modification of interest. It is important they are defined exactly as MaxQuant does: Examples: 'Oxidation (M)', 'Acetyl (Protein N-term)', 'Unmodified', etc. |
log_base |
The logarithmic scale for the intensity. Default is 2. |
long_names |
If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE. |
sep_names |
If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL. |
A plot showing the PTM of interest.
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics") MQCombined <- make_MQCombined(MQPathCombined) PlotPTMAcrossSamples(MQCombined, PTM_of_interest = 'Oxidation (M)')