PlotHydrophobicity {MQmetrics} | R Documentation |
Peptide hydrophobicity by GRAVY score
PlotHydrophobicity( MQCombined, show_median = TRUE, size_median = 1.5, binwidth = 0.2, palette = "Set2", plots_per_page = 5, tabular_output = FALSE )
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
show_median |
If true it will show the median of each group, as a red dashed line.By default is TRUE. |
size_median |
The width of the median line in the plots. |
binwidth |
Selects the binwidth of the histogram. By default = 0.2 |
palette |
The palette from the Package RColorBrewer. By default is 'Set2'. |
plots_per_page |
Establish the maximum number of plots per page. |
tabular_output |
If true a table with the information will be the output. |
Returns a histogram per sample, showing the frequency of the peptide's hydrophobicity GRAVY value.
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics") MQCombined <- make_MQCombined(MQPathCombined) PlotHydrophobicity(MQCombined)