adjust_EB {MMUPHin} | R Documentation |
Perform batch adjustment on standardized feature abundances, based on EB shrinked per-batch location and scale parameters
adjust_EB(s_data, l_params_shrink, l_stand_feature, batchmod, n_batch, l_ind)
s_data |
feature-by-sample matrix of standardized abundances. |
l_params_shrink |
list of shrinked parameters, as returned by fit_shrink. |
l_stand_feature |
list of per-feature standardization fits, as returned by fit_stand_feature. |
batchmod |
design matrix for batch variables. |
n_batch |
number of batches in the data. |
l_ind |
list of indicator matrices, as returned by construct_ind. |
feature-by-sample matrix of batch-adjusted feature abundances.