KBoost_human_symbol {KBoost} | R Documentation |
Function for KBoost on data from a human sample annotated with Symbol names.
KBoost_human_symbol(X, gen_names, g, v, ite, pos_weight, neg_weight)
X |
an NxG matrix with the expression values of G genes and N samples. |
gen_names |
SYMBOL gene names corresponding to the columns of X. |
g |
a positive no., width parameter for the RBF kernel. (default g = 40) |
v |
a double between 0 and 1, the shrinkage parameter. (default v =0.1) |
ite |
an integer with the number of iterations (default ite = 3) |
pos_weight |
no. between 0 and 1. Prior that a TF regulate a gene. |
neg_weight |
no. between 0 and 1, for TF gene pairs not seen before. |
list with results of KBoost on a dataset with Symbol gene names.
X = rnorm(50,0,1) X = matrix(X,10,5) gen_names = c("TP53","YY1","CTCF","MDM2","ESR1") grn = KBoost_human_symbol(X,gen_names,pos_weight = 0.6, neg_weight =0.4)