miRTargets_Stat {IntramiRExploreR} | R Documentation |
Extracting miRNAs that target a query gene.
miRTargets_Stat( miR, method = c("Pearson", "Distance", "Both", "BothIntersect"), Platform = c("Affy1", "Affy2"), outpath = tempdir(), Text = FALSE )
miR |
character. miRNA symbol. |
method |
character. Choices are "Pearson", "Distance","Both" and "BothIntersected" |
Platform |
character. Choices are "Affy1","Affy2". |
outpath |
character. The path where the data is stored if TEXT=TRUE. Default is tempdir(). |
Text |
logical . To choose between storing the data as text file. Default is FALSE. |
Outputs the target information, Target Prediction Score, miRNA target function and Target Database that predicts the interaction in a dataframe. Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.
miRNA="dme-miR-12" miRTargets_Stat (miRNA,method=c ("Pearson"),Platform=c ("Affy1"),Text=FALSE)