get_zScoreCutoff {InPAS} | R Documentation |
calculate local background z-score cutoff
get_zScoreCutoff(background, introns, totalCov, utr3, z = 2)
background |
A character(1) vector, indicating how background coverage is defined. |
introns |
An object of GenomicRanges::GRanges for introns |
totalCov |
total coverage, a list of output from |
utr3 |
An object of GenomicRanges::GRangesList, output of
|
z |
Z score cutoff value |
A named numeric vector containing local background Z-score cutoff values. The names are GRanges's name for 3' UTRs.
Jianhong Ou, Haibo Liu