run_singleSampleAnalysis {InPAS}R Documentation

do APA analysis for a single sample

Description

do APA event analysis for a single sample Using Poisson Hidden Markov models

Usage

run_singleSampleAnalysis(UTR3eset)

Arguments

UTR3eset

the output of get_UTR3eSet()

Details

the test will be performed by comparing a two-state versus an one-state Poisson Hidden Markov models.

Value

a matrix containing test results

Author(s)

Jianhong Ou

See Also

UTR3eSet, get_UTR3eSet(), depmixS4::depmix()

Examples

path <- system.file("extdata", package = "InPAS")
load(file.path(path, "eset.MAQC.rda"))
res <- InPAS:::run_singleSampleAnalysis(eset)

[Package InPAS version 2.2.0 Index]