findIT_TTPair {FindIT2} | R Documentation |
find influential TF of your input gene set based on public TF-Target data
findIT_TTPair( input_genes, TF_target_database, gene_background = NULL, TFHit_min = 5, TFHit_max = 10000 )
input_genes |
a character vector which represent genes set which you want to find influential TF for |
TF_target_database |
TF_target pair data with two column named TF_id and target_gene |
gene_background |
a character vector represent your bakcaground gene. If you do not assign background gene, program will consider all target gene as background |
TFHit_min |
minimal size of target gene regulated by TF |
TFHit_max |
maximal size of target gene regulated by TF |
data.frame
data("TF_target_database") data("test_geneSet") result_findIT_TTPair <- findIT_TTPair( input_genes = test_geneSet, TF_target_database = TF_target_database )