infere.con2ec {FELLA} | R Documentation |
Function infere.con2ec
infers network connections to KEGG EC
families by passing through genes. This assumes that the category being
mapped to enzymes is above them.
infere.con2ec(ids, ent, ent2gene, gene2enzyme)
ids |
Character vector of identifiers to map. For example, all the KEGG pathways |
ent |
Character, entity that we are mapping
(one of |
ent2gene |
Named character vector, names are the entity |
gene2enyzme |
Named character vector, names are genes and values are EC enzyme families category Character, one of: |
Two-column data frame. Column "from"
contains the
KEGG enzyme families whereas "to"
contains the entity ent
.
ids <- "hsa00010" ent <- "pathway" ent2gene <- c("hsa00010" = "hsa:10", "hsa00010" = "hsa:120") gene2enzyme <- c("hsa:10" = "1.1.1.1", "hsa:120" = "1.2.3.4") FELLA:::infere.con2ec(ids, ent, ent2gene, gene2enzyme)