query_ctd_gene {CTDquerier}R Documentation

Function to query CTDbase using gene terminology ( Gene Symbol )

Description

This function checks for CTDbase gene vocabulary and query CTDbase for each one, downloading gene-gene interactions, chemicals interactions, associated disease, associated KEGG pathways and associated GO terms.

Usage

query_ctd_gene(terms, ask = TRUE, verbose = FALSE)

Arguments

terms

Character vector with the genes used in the query.

ask

(default TRUE) If TRUE it asks the the persistent location must be used to save the vocabulary if it was not downloaded previously.

verbose

(default FALSE) If set to TRUE is shows relevant information of each step.

Value

An object of class CTDdata.

Examples

rst <- query_ctd_gene( terms = c( "APP", "HMOX1A", "hmox1" ), verbose = TRUE )

[Package CTDquerier version 2.2.0 Index]