load_ctd_dise {CTDquerier}R Documentation

Function to load the .tsv.gz file for disease

Description

Function to load the .tsv.gz file for disease

Usage

load_ctd_dise(verbose = FALSE)

Arguments

verbose

(default FALSE) If set to TRUE messages and warnings are raised.

Details

The field included in the file (CTD_diseases.tsv.gz) are:

  1. DiseaseName

  2. DiseaseID (MeSH or OMIM identifier)

  3. Definition

  4. AltDiseaseIDs (alternative identifiers; '|'-delimited list)

  5. ParentIDs (identifiers of the parent terms; '|'-delimited list)

  6. TreeNumbers (identifiers of the disease's nodes; '|'-delimited list)

  7. ParentTreeNumbers (identifiers of the parent nodes; '|'-delimited list)

  8. Synonyms ('|'-delimited list)

  9. SlimMappings (MEDIC-Slim mappings; '|'-delimited list)

Value

A data.frame with the content of the file "CTD_genes.tsv.gz"

Examples

if(download_ctd_dise()){
fdl <- load_ctd_dise()
dim( fdl )
}

[Package CTDquerier version 2.2.0 Index]