ex.corrected.data {BEclear}R Documentation

Example matrix of corrected data for the BEclear-package

Description

Example matrix containing a already batch effect corrected sample matrix of beta values from breast invasive carcinoma TCGA methylation data.[1] The matrix contains a small amount of predicted beta values outside of the boundaries to show the operating principles of some of the methods from the BEclear package.

Usage

data(BEclearCorrected)

Format

A matrix containing already corrected beta values of some samples from the breast invasive carcinoma TCGA methylation data. The colnames denote samples, rownames denote gene names.

References

Cancer Genome Atlas Research Network, Weinstein JN, Collisson EA, Mills GB, Shaw KRM, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM (2013). “The Cancer Genome Atlas Pan-Cancer analysis project.” Nature genetics, 45(10), 1113–20. ISSN 1546-1718, doi: 10.1038/ng.2764, http://www.ncbi.nlm.nih.gov/pubmed/24071849 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3919969.


[Package BEclear version 2.10.0 Index]