CheckArguments_Impute {ADImpute} | R Documentation |
CheckArguments_Impute
checks whether the arguments passed
to Impute
are correct.
CheckArguments_Impute(data, method.choice, do, tr.length, labels, cell.clusters, true.zero.thr, drop_thre)
data |
matrix; raw counts (genes as rows and samples as columns) |
method.choice |
character; best performing method in training data for each gene |
do |
character; choice of methods to be used for imputation. Currently
supported methods are |
tr.length |
matrix with at least 2 columns: 'hgnc_symbol' and 'transcript_length' |
labels |
character; vector specifying the cell type of each column of
|
cell.clusters |
integer; number of cell subpopulations |
true.zero.thr |
if set to NULL (default), no true zero estimation is
performed. Set to numeric value between 0 and 1 for estimation. Value
corresponds to the threshold used to determine true zeros: if the probability
of dropout is lower than |
drop_thre |
numeric; between 0 and 1 specifying the threshold to determine dropout values |
NULL object