Mergeomics

DOI: 10.18129/B9.bioc.Mergeomics    

Integrative network analysis of omics data

Bioconductor version: Release (3.13)

The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).

Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang

Maintainer: Zeyneb Kurt <zeynebkurt at gmail.com>

Citation (from within R, enter citation("Mergeomics")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Mergeomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mergeomics")

 

PDF R Script Mergeomics
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.20.0
In Bioconductor since BioC 3.3 (R-3.3) (5.5 years)
License GPL (>= 2)
Depends R (>= 3.0.1)
Imports
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Mergeomics_1.20.0.tar.gz
Windows Binary Mergeomics_1.20.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) Mergeomics_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Mergeomics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Mergeomics
Package Short Url https://bioconductor.org/packages/Mergeomics/
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