fluidigmSC_removeGenesByLinearExpForAllType {uSORT} | R Documentation |
A gene trimming function removes genes whose average expression value is below the log2(threshold), and also present in at least 10
fluidigmSC_removeGenesByLinearExpForAllType(log2ex_data, log2ex_avg_data, threshold)
log2ex_data |
A data frame containing log2 tranformed expression values, with rownames of genes and colnames of cells. |
log2ex_avg_data |
A data frame containing log2 tranformed average expression values for individual gene. |
threshold |
A limit of detection in the unit of TPM/CPM/RPMK. |
A vector of character containing gene names of those passed the filtering.