STS_sorting_wrapper {uSORT} | R Documentation |
A wrapper function for Side-to-Side (STS) sorting as proposed in [Tsafrir et al. 2005].
STS_sorting_wrapper(expr, no_randomization = 10)
expr |
An expresssion matrix containing n-rows of cells and m-cols of genes. |
no_randomization |
An integer number indicating the number of repeated sorting, each of which uses a randomaly selected initial cell ordering. |
A list containing permutated.expr
(data frame) and best.cost
(a numeric value).