sracipeCircuit<- {sRACIPE} | R Documentation |
Initialize the circuit from a topology file
or a data.frame
A typical topology file looks like
Source | Target | Type |
geneA | geneB | 2 |
geneB | geneC | 1 |
geneB | geneA | 2 |
Here the regulation type is specified by number - activation: 1
,
inhibition: 2
sracipeCircuit(.object) <- value ## S4 replacement method for signature 'RacipeSE' sracipeCircuit(.object) <- value
.object |
RacipeSE object |
value |
data.frame containing the circuit information |
data.frame
sracipeSimulate
, sracipeKnockDown
,
sracipeOverExp
, sracipePlotData
RacipeSet <- RacipeSE() data("demoCircuit") sracipeCircuit(RacipeSet) <- demoCircuit sracipeCircuit(RacipeSet) rm(RacipeSet, demoCircuit)