goPatt {restfulSE}R Documentation

Create a data.frame with ENSEMBL and SYMBOL identifiers associated with a GO TERM specified by a regular expression in termPattern

Description

Create a data.frame with ENSEMBL and SYMBOL identifiers associated with a GO TERM specified by a regular expression in termPattern

Usage

goPatt(
  termPattern = "neurotro",
  targets = c("ENSEMBL", "SYMBOL"),
  organism = "Hs",
  inst = "eg"
)

Arguments

termPattern

a character string encoding a regular expression to be matched to keys of type TERM in GO.db

targets

columns to be returned from org.[organism].[inst].db

organism

two-letter code for organism in the OrgDb family of packages

inst

two- or three-letter code (e.g., eg for ENTREZ GENE or sgd for yeastgenome.org) identifying institute responsible for annotation

Value

data.frame

Examples

gp = goPatt()
dim(gp)
head(gp)

[Package restfulSE version 1.14.2 Index]