getConsensusSTRINGIDs {pwOmics} | R Documentation |
Get consensus graph in STRING IDs.
getConsensusSTRINGIDs(data_omics, tps, string_db, updown = FALSE, phospho = TRUE)
data_omics |
OmicsData object. |
tps |
integer specifying current timepoint under consideration. |
string_db |
STRING_db object. |
updown |
boolean value; TRUE in case up- and downregulation should be checked individually for intersection. Type of checking is defined with parameter 'phospho'. |
phospho |
boolean value; TRUE in case up- and downregulation should be checked based on provided downstream phosphoprotein influence from identifyPR function; FALSE in case up- and downregulation should be checked for without phosphoprotein database knowledge. Default is TRUE. |
igraph object consensus graph with STRING IDs (only including proteins and transcription factors).