genGenelists {pwOmics} | R Documentation |
This function generates genelists from the chosen pathway databases for further processing in detPathways function.
genGenelists(intIDs, pwdatabases)
intIDs |
list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA. |
pwdatabases |
vector indicating with which pathway database the pathways should be determined; possible choices are "biocarta", "kegg", "nci", "reactome". |
list of genelists of specified pathway databases.