get_cvg_stats,Primers-method {openPrimeR} | R Documentation |
Retrieve statistics on the templates that are covered by a primer set.
## S4 method for signature 'Primers' get_cvg_stats( primers, templates, for.viewing = FALSE, total.percentages = FALSE, allowed.mismatches = Inf, cvg.definition = c("constrained", "basic") )
for.viewing |
Whether the table should be formatted for viewing rather than processing. |
total.percentages |
Whether group coverage percentages should relate to all template sequences or just those templates belonging to a specific group. |
allowed.mismatches |
The maximal allowed number of mismatches. By default, the number of mismatches is not restricted. |
cvg.definition |
If |
primer.df |
An object of class |
template.df |
An object of class |
Data frame with coverage statistics.