top_taxa {microbiome}R Documentation

Top Taxa

Description

Return n most abundant taxa (based on total abundance over all samples), sorted by abundance

Usage

top_taxa(x, n = ntaxa(x))

Arguments

x

phyloseq object

n

Number of top taxa to return (default: all)

Value

Character vector listing the top taxa

Examples

data(dietswap)
topx <- top_taxa(dietswap, n=10)

[Package microbiome version 1.14.0 Index]