topEvents {maser} | R Documentation |
Filter splicing events based on false discovery rate and PSI change.
topEvents(events, fdr = 0.05, deltaPSI = 0.1)
events |
a maser object. |
fdr |
numeric, FDR (False Discovery Rate) cutoff. |
deltaPSI |
numeric, absolute minimum PSI (Percent spliced-in) change |
a maser object.
path <- system.file("extdata", file.path("MATS_output"), package = "maser") hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h")) ## To select all events with minimum 10% change in PSI, and FDR < 0.01 hypoxia_top <- topEvents(hypoxia, fdr = 0.01, deltaPSI = 0.1)