msaplot {ggtree}R Documentation

msaplot

Description

multiple sequence alignment with phylogenetic tree

Usage

msaplot(
  p,
  fasta,
  offset = 0,
  width = 1,
  color = NULL,
  window = NULL,
  bg_line = TRUE,
  height = 0.8
)

Arguments

p

tree view

fasta

fasta file, multiple sequence alignment

offset

offset of MSA to tree

width

total width of alignment, compare to width of tree

color

color

window

specific a slice to display

bg_line

whether add background line in alignment

height

height ratio of sequence

Value

tree view

Author(s)

Guangchuang Yu


[Package ggtree version 3.0.4 Index]