mod_ora {fcoex} | R Documentation |
This function was modified from the CEMiTool package. Chunks of code were retained "as is"
mod_ora(fc, gmt, verbose = FALSE) ## S4 method for signature 'fcoex' mod_ora(fc, gmt, verbose = FALSE)
fc |
A fcoex object. |
gmt |
A gmt file with gene sets for ora analysis |
verbose |
Controls verbosity. Defaults to FALSE. |
A fcoex object containing over-representation analysis data
data("fc") gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool") gmt_in <- pathwayPCA::read_gmt(gmt_fname) fc <- mod_ora(fc, gmt_in)