tcga_colon_expression {epivizrChart}R Documentation

Example exon-level RNAseq data from TCGA project for epivizr vignette.

Description

A SummarizedExperiment::RangedSummarizedExperiment object containing exon-level counts from RNAseq data for colon tumor and normal tissue from the TCGA project. Only exons in human chromosome 11 are included.

Usage

data(tcga_colon_expression)

Format

A SummarizedExperiment::RangedSummarizedExperiment object with 12,800 rows (exons) and 40 samples.

assay(tcga_colon_expression)

exon-level count matrix

colData(tcga_colon_expression)

a DataFrame containing sample information. Normal/Tumor status is given in column sample_type

Source

TCGA project: https://tcga-data.nci.nih.gov/tcga/


[Package epivizrChart version 1.14.0 Index]