easyRNASeq accessors {easyRNASeq} | R Documentation |
These functions and generics define 'accessors' (to get and set values) for objects in the easyRNASeq package.
genomicAnnotation(obj) readCounts(obj,count=c("exons","features","genes","islands","transcripts"), summarization=c("bestExons","geneModels"),unique=FALSE) genomicAnnotation(obj) <- value
obj |
An object derived from class |
count |
The type of count you want to access, 'genes','features','exons','transcripts' or 'islands' |
summarization |
If count is set to genes, precise the type of summarization, 'bestExons' or 'geneModels' |
unique |
For the 'exons' count only. Should the counts returned be unique for their identifier (i.e. the matrix row names)? |
value |
The replacement value. |
Usually, the value of the corresponding slot, or other simple content
described on the help page of easyRNASeq
.
Nicolas Delhomme
# This class is deprecated and as such there are no exmples of its use