setup_mappa {chipenrich} | R Documentation |
Function to setup mappability
setup_mappa(mappa_code, genome, ldef_code, ldef_obj)
mappa_code |
One of |
genome |
One of the |
ldef_code |
One of 'nearest_tss', 'nearest_gene', 'exon', 'intron', '1kb',
'1kb_outside', '1kb_outside_upstream', '5kb', '5kb_outside', '5kb_outside_upstream',
'10kb', '10kb_outside', '10kb_outside_upstream'. Alternately, a file path for
a custom locus definition. NOTE: Must be for a |
ldef_obj |
A |
A data.frame
with columns gene_id
and mappa
.