setup_genesets {chipenrich} | R Documentation |
Function to setup genesets
setup_genesets(gs_codes, ldef_obj, genome, min_geneset_size, max_geneset_size)
gs_codes |
A character vector of geneset databases to be tested for
enrichment. See |
ldef_obj |
A |
genome |
One of the |
min_geneset_size |
Sets the minimum number of genes a gene set may have to be considered for enrichment testing. |
max_geneset_size |
Sets the maximum number of genes a gene set may have to be considered for enrichment testing. |
A list with components consisting of GeneSet
objects for each
of the elements of genesets
. NOTE: Custom genesets must be run separately
from built in gene sets.