pvalueType {categoryCompare} | R Documentation |
Queries or sets the type of p-values to return from objects, either base calculated (pvals) or from fdr calculations (fdr)
pvalueType(object)
object |
Can be |
pvalueType(object)
gets the type of p-values
to be returned from HyperGResultCC
and ccEnrichResult
objects
pvalueType(object)<-
will set the type of p-values
to be returned from HyperGResultCC
, ccEnrichResult
, ccEnrichCollection
. Note that for a ccEnrichCollection
, the type is changed for all contained ccEnrichResults
Robert M Flight
HyperGResultCC
ccEnrichResult
ccEnrichCollection
# pvalueType-Methods data(ccData) ## Not run: pvalueType(enrichLists) # this returns an error pvalueType(enrichLists[[1]]) pvalueType(enrichLists[[1]][[1]]) # change the type for one of the results pvalueType(enrichLists[[1]]) <- 'pval' # Not recommended practice enrichLists # change for all of the results pvalueType(enrichLists) <- 'pval' enrichLists