cytOutNodes-methods {categoryCompare} | R Documentation |
cytOutNodes
Allows export of currently selected nodes in the Cytoscape window for data export
signature(descStr = "character", cwObj = "numeric", saveObj = "list")
descStr
is a string describing the nodes that are currently selected, cwObj
is the CytoscapeWindow
that the nodes are in, and then saveObj
is a previously generated cytOutNodes
list, and is optional.
## Not run: hasCy <- (if (.Platform$OS.type %in% "windows") { (length(grep("Cytoscape", system("tasklist", intern=TRUE))) > 0)}) if hasCy { ccResults$BP <- breakEdges(ccResults$BP, 0.8) cwObj <- ccOutCyt(ccResults$BP,ccOpts) # user selects some nodes in Cytoscape RCy3::selectNodes(cwObj, c("GO:0007017", "GO:0000226", "GO:0007051", "GO:0007052")) savedNodes <- cytOutNodes("random1", cwObj) # save them # and selects some other nodes RCy3::selectNodes(cwObj, c("GO:0071103", "GO:0034728", "GO:0006323", "GO:0030261", "GO:0006334"), preserve.current.selection=FALSE) savedNodes <- cytOutNodes("random2", cwObj, savedNodes) } ## End(Not run)