transition {atSNP}R Documentation

Default transition probability matrix for nucleotide sequences in the reference genome.

Description

This parameter is fitted using 61bp windowns around the SNPs in the NHGRI catalog. Loaded by 'data(default_par)'.

Format

A 4 by 4 numeric matrix.

Author(s)

Sunyoung Shin sunyoung.shin@utdallas.edu, Chandler Zuo chandler.c.zuo@gmail.com


[Package atSNP version 1.8.0 Index]