+,AbSeqRep,AbSeqCRep-method {abseqR} | R Documentation |
Combines a AbSeqRep object with a AbSeqCRep object together for comparison
## S4 method for signature 'AbSeqRep,AbSeqCRep' e1 + e2
e1 |
AbSeqRep. |
e2 |
AbSeqCRep. |
AbSeqCRep object. Calling abseqR
's
functions on this object will always result in a comparison.
abseqReport
returns a list
of AbSeqRep
s
# Use example data from abseqR as abseqPy's output, substitute this # with your own abseqPy output directory abseqPyOutput <- tempdir() file.copy(system.file("extdata", "ex", package = "abseqR"), abseqPyOutput, recursive=TRUE) samples <- abseqReport(file.path(abseqPyOutput, "ex"), report = 0) # The provided example data has PCR1, PCR2, and PCR3 samples contained within # pcr1 is an instance of AbSeqRep pcr1 <- samples[["PCR1"]] # pcr23 is instance of AbSeqCRep pcr23 <- samples[["PCR2"]] + samples[["PCR3"]] # pcr123 is an instance of AbSeqCRep pcr123 <- pcr1 + pcr23 # you can now call the report function on this object # report(pcr123) # uncomment this line to execute report